Installation
HAYSTAC can be run on either macOS or Linux based systems, and the source code is available on github
.
The recommended way to install haystac
, and all if its dependencies, is via the [mamba](https://mamba.readthedocs.io/en/latest/installation.html)
package manager (a fast replacement for [conda](https://docs.conda.io/projects/conda/en/latest/index.html)).
You can install haystac
using conda
, however, it will take significantly longer to install and analyses will run slower.
Install mamba
If you do not have either mamba
or conda
already installed, please refer to the [install instructions](
https://mamba.readthedocs.io/en/latest/installation.html) for mambaforge
.
If you have conda
installed, but not mamba
, then install mamba
into the base environment:
conda install -n base -c conda-forge mamba
Install haystac
Then use mamba
to install haystac
into a new environment:
mamba create -c conda-forge -c bioconda -n haystac haystac
And activate the environment:
conda activate haystac
We recommend that you install haystac
into a new environment to avoid dependency conflicts with other software.
Git
Clone from github
:
git clone https://github.com/antonisdim/haystac.git